pp. 395-406
S&M499 Research Paper in Biosensors and Related Areas Published: 2002 Sensing of Chemical Substances Using Gene Expression Patterns in Caenorhabditis Elegans [PDF] Tetsuya Matsuno, Kazuhiro Ura, Risa Sonoda, Yuji Kohara, Hiroko Uesugi, Koji Arizono, Taisen Iguchi and Nobuaki Tominaga Keywords: gene expression pattern, cluster analysis, endocrine disruptor, cDNA microarray, C. elegans
We attempted to establish a system for sensing chemical substances using gene expression patterns in Caenorhabditis elegans (C. elegans). The target chemical substances used in this study were steroid hormones: estradiol and testosterone. These hormones are known to act as endocrine disruptors when the substances which come from outside are received by biological systems as an external (xenobiotic) factor. The effects of these substances on expression patterns were measured using the cDNA microarray. The hierarchical clustering method was applied to analyse the response patterns. They were classified according to the similarity of their responses. We found that each cluster, which was a group of similar response patterns, corresponds to one kind of chemical substance. This means that the C. elegans cDNA microarray can be utilized as a chemical sensing system.
Cite this article Tetsuya Matsuno, Kazuhiro Ura, Risa Sonoda, Yuji Kohara, Hiroko Uesugi, Koji Arizono, Taisen Iguchi and Nobuaki Tominaga, Sensing of Chemical Substances Using Gene Expression Patterns in Caenorhabditis Elegans, Sens. Mater., Vol. 14, No. 7, 2002, p. 395-406. |